16.4. Managing Kernel Resources

16.4.1. Shared Memory and Semaphores
16.4.2. systemd RemoveIPC
16.4.3. Resource Limits
16.4.4. Linux Memory Overcommit
16.4.5. Linux Huge Pages

LightDB can sometimes exhaust various operating system resource limits, especially when multiple copies of the server are running on the same system, or in very large installations. This section explains the kernel resources used by LightDB and the steps you can take to resolve problems related to kernel resource consumption.

16.4.1. Shared Memory and Semaphores

LightDB requires the operating system to provide inter-process communication (IPC) features, specifically shared memory and semaphores. Unix-derived systems typically provide System V IPC, POSIX IPC, or both. Windows has its own implementation of these features and is not discussed here.

By default, LightDB allocates a very small amount of System V shared memory, as well as a much larger amount of anonymous mmap shared memory. Alternatively, a single large System V shared memory region can be used (see shared_memory_type). In addition a significant number of semaphores, which can be either System V or POSIX style, are created at server startup. Currently, POSIX semaphores are used on Linux and FreeBSD systems while other platforms use System V semaphores.

System V IPC features are typically constrained by system-wide allocation limits. When LightDB exceeds one of these limits, the server will refuse to start and should leave an instructive error message describing the problem and what to do about it. (See also Section 16.3.1.) The relevant kernel parameters are named consistently across different systems; Table 16.1 gives an overview. The methods to set them, however, vary. Suggestions for some platforms are given below.

Table 16.1. System V IPC Parameters

NameDescriptionValues needed to run one LightDB instance
SHMMAXMaximum size of shared memory segment (bytes)at least 1kB, but the default is usually much higher
SHMMINMinimum size of shared memory segment (bytes)1
SHMALLTotal amount of shared memory available (bytes or pages)same as SHMMAX if bytes, or ceil(SHMMAX/PAGE_SIZE) if pages, plus room for other applications
SHMSEGMaximum number of shared memory segments per processonly 1 segment is needed, but the default is much higher
SHMMNIMaximum number of shared memory segments system-widelike SHMSEG plus room for other applications
SEMMNIMaximum number of semaphore identifiers (i.e., sets)at least ceil((max_connections + autovacuum_max_workers + max_wal_senders + max_worker_processes + 5) / 16) plus room for other applications
SEMMNSMaximum number of semaphores system-wideceil((max_connections + autovacuum_max_workers + max_wal_senders + max_worker_processes + 5) / 16) * 17 plus room for other applications
SEMMSLMaximum number of semaphores per setat least 17
SEMMAPNumber of entries in semaphore mapsee text
SEMVMXMaximum value of semaphoreat least 1000 (The default is often 32767; do not change unless necessary)

LightDB requires a few bytes of System V shared memory (typically 48 bytes, on 64-bit platforms) for each copy of the server. On most modern operating systems, this amount can easily be allocated. However, if you are running many copies of the server or you explicitly configure the server to use large amounts of System V shared memory (see shared_memory_type and dynamic_shared_memory_type), it may be necessary to increase SHMALL, which is the total amount of System V shared memory system-wide. Note that SHMALL is measured in pages rather than bytes on many systems.

Less likely to cause problems is the minimum size for shared memory segments (SHMMIN), which should be at most approximately 32 bytes for LightDB (it is usually just 1). The maximum number of segments system-wide (SHMMNI) or per-process (SHMSEG) are unlikely to cause a problem unless your system has them set to zero.

When using System V semaphores, LightDB uses one semaphore per allowed connection (max_connections), allowed autovacuum worker process (autovacuum_max_workers) and allowed background process (max_worker_processes), in sets of 16. Each such set will also contain a 17th semaphore which contains a magic number, to detect collision with semaphore sets used by other applications. The maximum number of semaphores in the system is set by SEMMNS, which consequently must be at least as high as max_connections plus autovacuum_max_workers plus max_wal_senders, plus max_worker_processes, plus one extra for each 16 allowed connections plus workers (see the formula in Table 16.1). The parameter SEMMNI determines the limit on the number of semaphore sets that can exist on the system at one time. Hence this parameter must be at least ceil((max_connections + autovacuum_max_workers + max_wal_senders + max_worker_processes + 5) / 16). Lowering the number of allowed connections is a temporary workaround for failures, which are usually confusingly worded No space left on device, from the function semget.

In some cases it might also be necessary to increase SEMMAP to be at least on the order of SEMMNS. If the system has this parameter (many do not), it defines the size of the semaphore resource map, in which each contiguous block of available semaphores needs an entry. When a semaphore set is freed it is either added to an existing entry that is adjacent to the freed block or it is registered under a new map entry. If the map is full, the freed semaphores get lost (until reboot). Fragmentation of the semaphore space could over time lead to fewer available semaphores than there should be.

Various other settings related to semaphore undo, such as SEMMNU and SEMUME, do not affect LightDB.

When using POSIX semaphores, the number of semaphores needed is the same as for System V, that is one semaphore per allowed connection (max_connections), allowed autovacuum worker process (autovacuum_max_workers) and allowed background process (max_worker_processes). On the platforms where this option is preferred, there is no specific kernel limit on the number of POSIX semaphores.

AIX

It should not be necessary to do any special configuration for such parameters as SHMMAX, as it appears this is configured to allow all memory to be used as shared memory. That is the sort of configuration commonly used for other databases such as DB/2.

It might, however, be necessary to modify the global ulimit information in /etc/security/limits, as the default hard limits for file sizes (fsize) and numbers of files (nofiles) might be too low.

FreeBSD

The default shared memory settings are usually good enough, unless you have set shared_memory_type to sysv. System V semaphores are not used on this platform.

The default IPC settings can be changed using the sysctl or loader interfaces. The following parameters can be set using sysctl:

# sysctl kern.ipc.shmall=32768
# sysctl kern.ipc.shmmax=134217728

To make these settings persist over reboots, modify /etc/sysctl.conf.

If you have set shared_memory_type to sysv, you might also want to configure your kernel to lock System V shared memory into RAM and prevent it from being paged out to swap. This can be accomplished using the sysctl setting kern.ipc.shm_use_phys.

If running in a FreeBSD jail, you should set its sysvshm parameter to new, so that it has its own separate System V shared memory namespace. (Before FreeBSD 11.0, it was necessary to enable shared access to the host's IPC namespace from jails, and take measures to avoid collisions.)

NetBSD

The default shared memory settings are usually good enough, unless you have set shared_memory_type to sysv. You will usually want to increase kern.ipc.semmni and kern.ipc.semmns, as NetBSD's default settings for these are uncomfortably small.

IPC parameters can be adjusted using sysctl, for example:

# sysctl -w kern.ipc.semmni=100

To make these settings persist over reboots, modify /etc/sysctl.conf.

If you have set shared_memory_type to sysv, you might also want to configure your kernel to lock System V shared memory into RAM and prevent it from being paged out to swap. This can be accomplished using the sysctl setting kern.ipc.shm_use_phys.

OpenBSD

The default shared memory settings are usually good enough, unless you have set shared_memory_type to sysv. You will usually want to increase kern.seminfo.semmni and kern.seminfo.semmns, as OpenBSD's default settings for these are uncomfortably small.

IPC parameters can be adjusted using sysctl, for example:

# sysctl kern.seminfo.semmni=100

To make these settings persist over reboots, modify /etc/sysctl.conf.

HP-UX

The default settings tend to suffice for normal installations.

IPC parameters can be set in the System Administration Manager (SAM) under Kernel ConfigurationConfigurable Parameters. Choose Create A New Kernel when you're done.

Linux

The default shared memory settings are usually good enough, unless you have set shared_memory_type to sysv, and even then only on older kernel versions that shipped with low defaults. System V semaphores are not used on this platform.

The shared memory size settings can be changed via the sysctl interface. For example, to allow 16 GB:

$ sysctl -w kernel.shmmax=17179869184
$ sysctl -w kernel.shmall=4194304

To make these settings persist over reboots, see /etc/sysctl.conf.

macOS

The default shared memory and semaphore settings are usually good enough, unless you have set shared_memory_type to sysv.

The recommended method for configuring shared memory in macOS is to create a file named /etc/sysctl.conf, containing variable assignments such as:

kern.sysv.shmmax=4194304
kern.sysv.shmmin=1
kern.sysv.shmmni=32
kern.sysv.shmseg=8
kern.sysv.shmall=1024

Note that in some macOS versions, all five shared-memory parameters must be set in /etc/sysctl.conf, else the values will be ignored.

SHMMAX can only be set to a multiple of 4096.

SHMALL is measured in 4 kB pages on this platform.

It is possible to change all but SHMMNI on the fly, using sysctl. But it's still best to set up your preferred values via /etc/sysctl.conf, so that the values will be kept across reboots.

Solaris
illumos

The default shared memory and semaphore settings are usually good enough for most LightDB applications. Solaris defaults to a SHMMAX of one-quarter of system RAM. To further adjust this setting, use a project setting associated with the lightdb user. For example, run the following as root:

projadd -c "LightDB DB User" -K "project.max-shm-memory=(privileged,8GB,deny)" -U lightdb -G lightdb user.lightdb

This command adds the user.lightdb project and sets the shared memory maximum for the lightdb user to 8GB, and takes effect the next time that user logs in, or when you restart LightDB (not reload). The above assumes that LightDB is run by the lightdb user in the lightdb group. No server reboot is required.

Other recommended kernel setting changes for database servers which will have a large number of connections are:

project.max-shm-ids=(priv,32768,deny)
project.max-sem-ids=(priv,4096,deny)
project.max-msg-ids=(priv,4096,deny)

Additionally, if you are running LightDB inside a zone, you may need to raise the zone resource usage limits as well. See "Chapter2: Projects and Tasks" in the System Administrator's Guide for more information on projects and prctl.

16.4.2. systemd RemoveIPC

If systemd is in use, some care must be taken that IPC resources (including shared memory) are not prematurely removed by the operating system. This is especially of concern when installing LightDB from source. Users of distribution packages of LightDB are less likely to be affected, as the lightdb user is then normally created as a system user.

The setting RemoveIPC in logind.conf controls whether IPC objects are removed when a user fully logs out. System users are exempt. This setting defaults to on in stock systemd, but some operating system distributions default it to off.

A typical observed effect when this setting is on is that shared memory objects used for parallel query execution are removed at apparently random times, leading to errors and warnings while attempting to open and remove them, like

WARNING:  could not remove shared memory segment "/LightDB.1450751626": No such file or directory

Different types of IPC objects (shared memory vs. semaphores, System V vs. POSIX) are treated slightly differently by systemd, so one might observe that some IPC resources are not removed in the same way as others. But it is not advisable to rely on these subtle differences.

A user logging out might happen as part of a maintenance job or manually when an administrator logs in as the lightdb user or something similar, so it is hard to prevent in general.

What is a system user is determined at systemd compile time from the SYS_UID_MAX setting in /etc/login.defs.

Packaging and deployment scripts should be careful to create the lightdb user as a system user by using useradd -r, adduser --system, or equivalent.

Alternatively, if the user account was created incorrectly or cannot be changed, it is recommended to set

RemoveIPC=no

in /etc/systemd/logind.conf or another appropriate configuration file.

Caution

At least one of these two things has to be ensured, or the LightDB server will be very unreliable.

16.4.3. Resource Limits

Unix-like operating systems enforce various kinds of resource limits that might interfere with the operation of your LightDB server. Of particular importance are limits on the number of processes per user, the number of open files per process, and the amount of memory available to each process. Each of these have a hard and a soft limit. The soft limit is what actually counts but it can be changed by the user up to the hard limit. The hard limit can only be changed by the root user. The system call setrlimit is responsible for setting these parameters. The shell's built-in command ulimit (Bourne shells) or limit (csh) is used to control the resource limits from the command line. On BSD-derived systems the file /etc/login.conf controls the various resource limits set during login. See the operating system documentation for details. The relevant parameters are maxproc, openfiles, and datasize. For example:

default:\
...
        :datasize-cur=256M:\
        :maxproc-cur=256:\
        :openfiles-cur=256:\
...

(-cur is the soft limit. Append -max to set the hard limit.)

Kernels can also have system-wide limits on some resources.

  • On Linux /proc/sys/fs/file-max determines the maximum number of open files that the kernel will support. It can be changed by writing a different number into the file or by adding an assignment in /etc/sysctl.conf. The maximum limit of files per process is fixed at the time the kernel is compiled; see /usr/src/linux/Documentation/proc.txt for more information.

The LightDB server uses one process per connection so you should provide for at least as many processes as allowed connections, in addition to what you need for the rest of your system. This is usually not a problem but if you run several servers on one machine things might get tight.

The factory default limit on open files is often set to socially friendly values that allow many users to coexist on a machine without using an inappropriate fraction of the system resources. If you run many servers on a machine this is perhaps what you want, but on dedicated servers you might want to raise this limit.

On the other side of the coin, some systems allow individual processes to open large numbers of files; if more than a few processes do so then the system-wide limit can easily be exceeded. If you find this happening, and you do not want to alter the system-wide limit, you can set LightDB's max_files_per_process configuration parameter to limit the consumption of open files.

16.4.4. Linux Memory Overcommit

The default virtual memory behavior on Linux is not optimal for LightDB. Because of the way that the kernel implements memory overcommit, the kernel might terminate the LightDB postmaster (the master server process) if the memory demands of either LightDB or another process cause the system to run out of virtual memory.

If this happens, you will see a kernel message that looks like this (consult your system documentation and configuration on where to look for such a message):

Out of Memory: Killed process 12345 (lightdb).

This indicates that the lightdb process has been terminated due to memory pressure. Although existing database connections will continue to function normally, no new connections will be accepted. To recover, LightDB will need to be restarted.

One way to avoid this problem is to run LightDB on a machine where you can be sure that other processes will not run the machine out of memory. If memory is tight, increasing the swap space of the operating system can help avoid the problem, because the out-of-memory (OOM) killer is invoked only when physical memory and swap space are exhausted.

If LightDB itself is the cause of the system running out of memory, you can avoid the problem by changing your configuration. In some cases, it may help to lower memory-related configuration parameters, particularly shared_buffers, work_mem, and hash_mem_multiplier. In other cases, the problem may be caused by allowing too many connections to the database server itself. In many cases, it may be better to reduce max_connections and instead make use of external connection-pooling software.

It is possible to modify the kernel's behavior so that it will not overcommit memory. Although this setting will not prevent the OOM killer from being invoked altogether, it will lower the chances significantly and will therefore lead to more robust system behavior. This is done by selecting strict overcommit mode via sysctl:

sysctl -w vm.overcommit_memory=2

or placing an equivalent entry in /etc/sysctl.conf. You might also wish to modify the related setting vm.overcommit_ratio. For details see the kernel documentation file https://www.kernel.org/doc/Documentation/vm/overcommit-accounting.

Another approach, which can be used with or without altering vm.overcommit_memory, is to set the process-specific OOM score adjustment value for the postmaster process to -1000, thereby guaranteeing it will not be targeted by the OOM killer. The simplest way to do this is to execute

echo -1000 > /proc/self/oom_score_adj

in the postmaster's startup script just before invoking the postmaster. Note that this action must be done as root, or it will have no effect; so a root-owned startup script is the easiest place to do it. If you do this, you should also set these environment variables in the startup script before invoking the postmaster:

export PG_OOM_ADJUST_FILE=/proc/self/oom_score_adj
export PG_OOM_ADJUST_VALUE=0

These settings will cause postmaster child processes to run with the normal OOM score adjustment of zero, so that the OOM killer can still target them at need. You could use some other value for LT_OOM_ADJUST_VALUE if you want the child processes to run with some other OOM score adjustment. (LT_OOM_ADJUST_VALUE can also be omitted, in which case it defaults to zero.) If you do not set LT_OOM_ADJUST_FILE, the child processes will run with the same OOM score adjustment as the postmaster, which is unwise since the whole point is to ensure that the postmaster has a preferential setting.

16.4.5. Linux Huge Pages

Using huge pages reduces overhead when using large contiguous chunks of memory, as LightDB does, particularly when using large values of shared_buffers. To use this feature in LightDB you need a kernel with CONFIG_HUGETLBFS=y and CONFIG_HUGETLB_PAGE=y. You will also have to adjust the kernel setting vm.nr_hugepages. To estimate the number of huge pages needed, start LightDB without huge pages enabled and check the postmaster's anonymous shared memory segment size, as well as the system's huge page size, using the /proc file system. This might look like:

$ head -1 $LTDATA/lightdb.pid
4170
$ pmap 4170 | awk '/rw-s/ && /zero/ {print $2}'
6490428K
$ grep ^Hugepagesize /proc/meminfo
Hugepagesize:       2048 kB

6490428 / 2048 gives approximately 3169.154, so in this example we need at least 3170 huge pages, which we can set with:

$ sysctl -w vm.nr_hugepages=3170

A larger setting would be appropriate if other programs on the machine also need huge pages. Don't forget to add this setting to /etc/sysctl.conf so that it will be reapplied after reboots.

Sometimes the kernel is not able to allocate the desired number of huge pages immediately, so it might be necessary to repeat the command or to reboot. (Immediately after a reboot, most of the machine's memory should be available to convert into huge pages.) To verify the huge page allocation situation, use:

$ grep Huge /proc/meminfo

It may also be necessary to give the database server's operating system user permission to use huge pages by setting vm.hugetlb_shm_group via sysctl, and/or give permission to lock memory with ulimit -l.

The default behavior for huge pages in LightDB is to use them when possible and to fall back to normal pages when failing. To enforce the use of huge pages, you can set huge_pages to on in lightdb.conf. Note that with this setting LightDB will fail to start if not enough huge pages are available.

For a detailed description of the Linux huge pages feature have a look at https://www.kernel.org/doc/Documentation/vm/hugetlbpage.txt.